Topologies


N.B.: If you use the following files in your work, please cite the primary source. (see Description field)

Show
entries

Name Forcefield Lipid Software Files
vanEerden2015_WPGG martini 2.0 WPGG - DGDG(18:3(9Z,12Z,15Z)/​​16:0) Gromacs WPGG.gro, WPGG.itp
vanEerden2015_WPSG martini 2.0 WPSG - SQDG(18:3(9Z,12Z,15Z)/​​16:0) Gromacs WPSG.gro, WPSG.itp
Wassenaar2015_PAPC martini 2.0 PAPC - PC(16:0/​​20:4(5Z,8Z,11Z,14Z)) Gromacs PAPC.gro, PAPC.itp
Wassenaar2015_PQPE martini 2.0 PQPE - PE(16:0/​​20:3(5Z,8Z,11Z)) Gromacs PQPE.gro, PQPE.itp
Wassenaar2015_PQPS martini 2.0 PQPS - PS(16:0/​​20:3(5Z,8Z,11Z)) Gromacs PQPS.gro, PQPS.itp
vanEerden2015_OPPG martini 2.0 OPPG - PG(18:1(9Z)/​​16:0) Gromacs OPPG.gro, OPPG.itp
vanEerden2015_3PPG martini 2.0 3PPG - PG(16:1(3E)/​​16:0) Gromacs 3PPG.gro, 3PPG.itp
vanEerden2015_3WPG martini 2.0 3WPG - PG(16:1(3E)/​​18:3(9Z,12Z,15Z)) Gromacs 3WPG.gro, 3WPG.itp
Ingólfsson2017_PAI1 martini 2.0 PAI1 - PIP[3'](16:0/​​20:4(5Z,8Z,11Z,14Z)) Gromacs PAI1.gro, PAI1.itp
López2013_POI6 martini 2.0 POI6 - PIP2[3',4'](16:0/​​18:1(9Z)) Gromacs POI6.gro, POI6.itp
Ingólfsson2014_POI6 martini 2.0 POI6 - PIP2[3',4'](16:0/​​18:1(9Z)) Gromacs POI6.gro, POI6.itp
Ingólfsson2017_PAI6 martini 2.0 PAI6 - PIP2[3',4'](16:0/​​​20:4(5Z,8Z,11Z,14Z)) Gromacs PAI6.gro, PAI6.itp
López2013_POI7 martini 2.0 POI7 - PIP3[3',4',5'](16:0/​​18:1(9Z)) Gromacs POI7.gro, POI7.itp
Ingólfsson2014_POI7 martini 2.0 POI7 - PIP3[3',4',5'](16:0/​​18:1(9Z)) Gromacs POI7.gro, POI7.itp
Ingólfsson2017_PAI7 martini 2.0 PAI7 - PIP3[3',4',5'](16:0/​​​20:4(5Z,8Z,11Z,14Z)) Gromacs PAI7.gro, PAI7.itp
Ma2017_CJA1 martini 2.0 CJA1 - Campylobacter jejuni lipid A - LipidA(GlcN(P/​N-14:0(3OH)/​14:0(3OH)),GlcN(N-14:0(3-16:0)/​N-14:0(3-16:0)/​P)) Gromacs CJA1.gro, CJA1.itp
Wassenaar2015_DPCE martini 2.0 DPCE - Cer(d16:1/​​16:0) Gromacs DPCE.gro, DPCE.itp
Wassenaar2015_DXCE martini 2.0 DXCE - Cer(d24:1/​​24:0) Gromacs DXCE.gro, DXCE.itp
Wassenaar2015_PNCE martini 2.0 PNCE - Cer(d16:1/​​24:1) Gromacs PNCE.gro, PNCE.itp
Wassenaar2015_XNCE martini 2.0 XNCE - Cer(d24:1/​​24:1) Gromacs XNCE.gro, XNCE.itp
Ingólfsson2017_DBCE martini 2.0 DBCE - Cer(d22:1/​​​22:0) Gromacs DBCE.gro, DBCE.itp
Ingólfsson2017_POCE martini 2.0 POCE - Cer(d16:1(4E)/​18:1(9Z)) Gromacs POCE.gro, POCE.itp
Wassenaar2015_DBSM martini 2.0 DBSM - SM(d22:1/​​22:0) Gromacs DBSM.gro, DBSM.itp
Wassenaar2015_DXSM martini 2.0 DXSM - SM(d24:1/​​24:0) Gromacs DXSM.gro, DXSM.itp
Wassenaar2015_BNSM martini 2.0 BNSM - SM(d22:1/​​24:1) Gromacs BNSM.gro, BNSM.itp
Showing 426 to 450 of 600 entries