N.B.: If you use the following files in your work, please cite the primary source. (see Description field)
| Name: | neuronal plasma membrane |
| Lipids: | CHOL, PUPE, PAPE, POPC, PUPS, DPPC, PAPS, PAPC, POPE, POPS, PUPI, DPSM, OUPE, OAPE, PAPI, POPI, DOPC, PUPC, OUPS, PIPI, DPPS, DPCE, PWPC, OIPC, PNSM, PADG, PAI1, PAI6, PAI7, OIPE, PBSM, PAPA, OUPC, I0PE, POSM, PODG, POI1, POI6, POI7, POPA, P0PC, P0PE, DBCE, PNCE, POCE, I0PC, DPGS, PNGS, DBGS, DPG1, DPG3, POGS, PNG1, PNG3, DBG1, DBG3, POG1, POG3 |
| Forcefield: | martini 2.0 |
| Software: | Gromacs 4.6 |
| Files: |
LIM25_neuronal_plasma_membrane.gro,
LIM25_neuronal_plasma_membrane.txt Simulation files |
| Number: | 19447 lipids |
| Temperature: | 310 °K |
| Equilibration: | 80000 ns |
| Tags: | mammalian, plasma membrane, neuronal |
| Proteins: | |
| Description: | Primary source: https://bbs.llnl.gov/neuronal-membrane-data.html POPC and DPPC (version Ingolfsson2017) have position restrains on the z-axes on the PO4 bead that can be controled with POS_Z_AXES POPX, DPPX, POP1, POP2, POP3, PAP1, PAP2, PAP3, PPC, IPC, PPE and IPE have been renamed POPC, DPPC, POI1, POI6, POI7, PAI1, PAI6, PAI7, P0PC, I0PC, P0PE and I0PE. |
| References: |
Ingólfsson2017
Biophysical Journal, 113.
Computational Lipidomics of the Neuronal Plasma Membrane |