Topologies


N.B.: If you use the following files in your work, please cite the primary source. (see Description field)

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Name Forcefield Lipid Software Files
Wassenaar2015_PIPA martini 2.0 PIPA - PA(16:0/​18:2(9Z,12Z)) Gromacs PIPA.gro, PIPA.itp
Wassenaar2015_PAPA martini 2.0 PAPA - PA(16:0/​20:4(5Z,8Z,11Z,14Z)) Gromacs PAPA.gro, PAPA.itp
Wassenaar2015_POPA martini 2.0 POPA - PA(16:0/​18:1(9Z)) Gromacs POPA.gro, POPA.itp
Ingólfsson2014_POPA martini 2.0 POPA - PA(16:0/​18:1(9Z)) Gromacs POPA.gro, POPA.itp
Wassenaar2015_PUPA martini 2.0 PUPA - PA(16:0/​22:6(4Z,7Z,10Z,13Z,16Z,19Z)) Gromacs PUPA.gro, PUPA.itp
Ingólfsson2014_PUPA martini 2.0 PUPA - PA(16:0/​22:6(4Z,7Z,10Z,13Z,16Z,19Z)) Gromacs PUPA.gro, PUPA.itp
Dahlberg2007_TOCL martini 2.0 TOCL - CL(1'-[18:1(9Z)/​18:1(9Z)],3'-[18:1(9Z)/​18:1(9Z)]) Gromacs TOCL.gro, TOCL.itp
Wassenaar2015_DPSM martini 2.0 DPSM - SM(d16:1/​16:0) Gromacs DPSM.gro, DPSM.itp
Wassenaar2015_POSM martini 2.0 POSM - SM(d16:1/​18:1) Gromacs POSM.gro, POSM.itp
Ingólfsson2014_POSM martini 2.0 POSM - SM(d16:1/​18:1) Gromacs POSM.gro, POSM.itp
Wassenaar2015_PGSM martini 2.0 PGSM - SM(d16:1/​20:1) Gromacs PGSM.gro, PGSM.itp
Ingólfsson2017_PBSM martini 2.0 PBSM - SM(d16:1/​22:0) Gromacs PBSM.gro, PBSM.itp
Wassenaar2015_PNSM martini 2.0 PNSM - SM(d16:1/​24:1) Gromacs PNSM.gro, PNSM.itp
Ingólfsson2017_PNSU martini 2.0 PNSU - (3'-sulfo)Galbeta-Cer(d18:1/​24:1(15Z)) Gromacs PNSU.gro, PNSU.itp
Marrink2007b_CHOL martini 2.0 CHOL - Cholesterol Gromacs CHOL.gro, CHOL.itp
Melo2015_CHOL martini 2.0 CHOL - Cholesterol Gromacs CHOL.gro, CHOL.itp
Kulig2015_POPC opls-aa Rog2016 POPC - PC(16:0/​18:1(9Z)) Gromacs POPC.gro, POPC.itp
Rog2015_OPPE opls-aa Rog2016 OPPE - PE(18:1(9Z)/​16:0) Gromacs OPPE.gro, OPPE.itp
Rog2015_POPS opls-aa Rog2016 POPS - PS(16:0/​18:1(9Z)) Gromacs POPS.gro, POPS.itp
Rog2015_SPSM opls-aa Rog2016 SPSM - SM(d18:1/​16:0) Gromacs SPSM.gro, SPSM.itp
Rog2015_SXSM opls-aa Rog2016 SXSM - SM(d18:1/​24:0) Gromacs SXSM.gro, SXSM.itp
Kulig2015_CHOL opls-aa Rog2016 CHOL - Cholesterol Gromacs CHOL.gro, CHOL.itp
Jambeck2012_POPC slipids POPC - PC(16:0/​18:1(9Z)) Gromacs POPC.gro, POPC.itp
Jambeck2012_DLPC slipids DLPC - PC(12:0/​12:0) Gromacs DLPC.gro, DLPC.itp
Jambeck2012_DMPC slipids DMPC - PC(14:0/​14:0) Gromacs DMPC.gro, DMPC.itp
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