Topologies


N.B.: If you use the following files in your work, please cite the primary source. (see Description field)

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Name Forcefield Lipid Software Files
Klauda2010_DIPE charmm36 DIPE - PE(18:2(9Z,12Z)/​18:2(9Z,12Z)) Gromacs DIPE.gro, DIPE.itp
Klauda2010_IWPE charmm36 IWPE - PE(18:2(9Z,12Z)/​18:3(9Z,12Z,15Z)) Gromacs IWPE.gro, IWPE.itp
Klauda2010_YOPE charmm36 YOPE - PE(16:1(9Z)/​18:1(9Z)) Gromacs YOPE.gro, YOPE.itp
Klauda2010_PYPE charmm36 PYPE - PE(16:0/​16:1(9Z)) Gromacs PYPE.gro, PYPE.itp
Pandit2012_PCPE charmm36 PCPE - PE(16:0/​18:0(11Cp)) Gromacs PCPE.gro, PCPE.itp
Venable2013_POPS charmm36 POPS - PS(16:0/​18:1(9Z)) Gromacs POPS.gro, POPS.itp
Venable2013_IWPS charmm36 IWPS - PS(18:2(9Z,12Z)/​18:3(9Z,12Z,15Z)) Gromacs IWPS.gro, IWPS.itp
Venable2013_YOPS charmm36 YOPS - PS(16:1(9Z)/​18:1(9Z)) Gromacs YOPS.gro, YOPS.itp
Kang2014_YOPG charmm36 YOPG - PG(16:1(9Z)/​18:1(9Z)) Gromacs YOPG.gro, YOPG.itp
Kang2014_DPPG charmm36 DPPG - PG(16:0/​16:0) Gromacs DPPG.gro, DPPG.itp
Kang2014_POPG charmm36 POPG - PG(16:0/​18:1(9Z)) Gromacs POPG.gro, POPG.itp
Pandit2012_PCPG charmm36 PCPG - PG(16:0/​18:0(11Cp)) Gromacs PCPG.gro, PCPG.itp
Wu2014_POPI charmm36 POPI - PI(16:0/​18:1(9Z)) Gromacs POPI.gro, POPI.itp
Wu2014_PYPI charmm36 PYPI - PI(16:0/​16:1(9Z)) Gromacs PYPI.gro, PYPI.itp
Wu2014_DIPI charmm36 DIPI - PI(18:2(9Z,12Z)/​18:2(9Z,12Z)) Gromacs DIPI.gro, DIPI.itp
Wu2014_PIPI charmm36 PIPI - PI(16:0/​18:2(9Z,12Z)) Gromacs PIPI.gro, PIPI.itp
Klauda2010_PIPA charmm36 PIPA - PA(16:0/​18:2(9Z,12Z)) Gromacs PIPA.gro, PIPA.itp
Klauda2010_POPA charmm36 POPA - PA(16:0/​18:1(9Z)) Gromacs POPA.gro, POPA.itp
Klauda2010_IWPA charmm36 IWPA - PA(18:2(9Z,12Z)/​18:3(9Z,12Z,15Z)) Gromacs IWPA.gro, IWPA.itp
Klauda2010_YOPA charmm36 YOPA - PA(16:1(9Z)/​18:1(9Z)) Gromacs YOPA.gro, YOPA.itp
Venable2014_SPCE charmm36 SPCE - Cer(d18:1/​16:0) Gromacs SPCE.gro, SPCE.itp
Venable2014_SXCE charmm36 SXCE - Cer(d18:1/​24:0) Gromacs SXCE.gro, SXCE.itp
Venable2014_DSSM charmm36 DSSM - SM(d18:1/​18:0) Gromacs DSSM.gro, DSSM.itp
Venable2014_SPSM charmm36 SPSM - SM(d18:1/​16:0) Gromacs SPSM.gro, SPSM.itp
Venable2014_SNSM charmm36 SNSM - SM(d18:1/​24:1(15Z)) Gromacs SNSM.gro, SNSM.itp
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