Topologies


N.B.: If you use the following files in your work, please cite the primary source. (see Description field)

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entries

Name Forcefield Lipid Software Files
Venable2014_SOSM charmm36 SOSM - SM(d18:1/​18:1(9Z)) Charmm SOSM.pdb, SOSM.str
Venable2014_S3SM charmm36 S3SM - SM(d18:1/​23:0) Charmm S3SM.pdb, S3SM.str
Lim2012_CHOL charmm36 CHOL - Cholesterol Charmm CHOL.pdb, CHOL.str
Pitman2004_CHOL charmm36 CHOL - Cholesterol Charmm CHOL.pdb, CHOL.str
Lim2012_ERGO charmm36 ERGO - Ergosterol Charmm ERGO.pdb, ERGO.str
Lim2012_STIG charmm36 STIG - Stigmasterol Charmm STIG.pdb, STIG.str
Lim2012_SITO charmm36 SITO - beta-sitosterol Charmm SITO.pdb, SITO.str
Dickson2014_DOPC Lipid14 DOPC - PC(18:1(9Z)/​18:1(9Z)) Amber DOPC.pdb, DOPC.lib
Feller2000_POPC Charmm27 POPC - PC(16:0/​18:1(9Z)) Gromacs POPC.gro, POPC.itp
Klauda2010_LIGN charmm36 LIGN - Lignoceric acid - 24:0 Gromacs LIGN.gro, LIGN.itp
Klauda2010_POPC charmm36 POPC - PC(16:0/​18:1(9Z)) Gromacs POPC.gro, POPC.itp
Klauda2010_DLPC charmm36 DLPC - PC(12:0/​12:0) Gromacs DLPC.gro, DLPC.itp
Klauda2010_DMPC charmm36 DMPC - PC(14:0/​14:0) Gromacs DMPC.gro, DMPC.itp
Klauda2010_DPPC charmm36 DPPC - PC(16:0/​16:0) Gromacs DPPC.gro, DPPC.itp
Klauda2010_PIPC charmm36 PIPC - PC(16:0/​18:2(9Z,12Z)) Gromacs PIPC.gro, PIPC.itp
Klauda2010_DYPC charmm36 DYPC - PC(16:1(9Z)/​16:1(9Z)) Gromacs DYPC.gro, DYPC.itp
Klauda2010_YOPC charmm36 YOPC - PC(16:1(9Z)/​18:1(9Z)) Gromacs YOPC.gro, YOPC.itp
Klauda2010_DOPC charmm36 DOPC - PC(18:1(9Z)/​18:1(9Z)) Gromacs DOPC.gro, DOPC.itp
Klauda2010_DIPC charmm36 DIPC - PC(18:2(9Z,12Z)/​18:2(9Z,12Z)) Gromacs DIPC.gro, DIPC.itp
Klauda2010_IWPC charmm36 IWPC - PC(18:2(9Z,12Z)/​18:3(9Z,12Z,15Z)) Gromacs IWPC.gro, IWPC.itp
Klauda2010_POPE charmm36 POPE - PE(16:0/​18:1(9Z)) Gromacs POPE.gro, POPE.itp
Klauda2010_DPPE charmm36 DPPE - PE(16:0/​16:0) Gromacs DPPE.gro, DPPE.itp
Klauda2010_PIPE charmm36 PIPE - PE(16:0/​18:2(9Z,12Z)) Gromacs PIPE.gro, PIPE.itp
Klauda2010_DOPE charmm36 DOPE - PE(18:1(9Z)/​18:1(9Z)) Gromacs DOPE.gro, DOPE.itp
Klauda2010_DYPE charmm36 DYPE - PE(16:1(9Z)/​16:1(9Z)) Gromacs DYPE.gro, DYPE.itp
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