Topologies


N.B.: If you use the following files in your work, please cite the primary source. (see Description field)

Lipid: POPC - PC(16:0/18:1(9Z))
Forcefield: martini 2.0
Software: Gromacs 3.3, 4.0, 4.5, 4.6, 5.0, 5.1, 2016
Version:Ingólfsson2014_Z
Files: POPC.gro, POPC.itp
Description:

Primary source: http://www.cgmartini.nl/index.php/plasma-membrane

This is POPC but with position restraints on the z-axes on the PO4 bead - controled with POS_Z_AXES

References: Wassenaar2015 Journal of Chemical Theory and Computation, 11. Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
Ingólfsson2014 Journal of the American Chemical Society, 136. Lipid Organization of the Plasma Membrane
Marrink2007 The Journal of Physical Chemistry B, 111. The MARTINI Force Field:  Coarse Grained Model for Biomolecular Simulations
Marrink2004 The Journal of Physical Chemistry B, 108. Coarse Grained Model for Semiquantitative Lipid Simulations
Available Membranes

Curator: Jean-Marc Crowet on April 14, 2020

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