N.B.: If you use the following files in your work, please cite the primary source. (see Description field)
| Name: | Pseudomonas aeruginosa biofilm |
| Lipids: | POPE, POPG, PCPG, YOPE, DPPE, PCPE, DPPG, YOPG |
| Forcefield: | charmm36 |
| Software: | Namd 2 |
| Files: |
LIM9_Pseudomonas_aeruginosa_biofilm.pdb,
LIM9_Pseudomonas_aeruginosa_biofilm.txt Parameters and other files
supplementary/
Simulation files
supplementary/biofilm.psf supplementary/biofilm.pdb supplementary/biofilm.crd supplementary/README |
| Number: | 100 lipids |
| Temperature: | 303 °K |
| Equilibration: | 400 ns |
| Tags: | plasma membrane, pseudomonas aeruginosa, inner plasma membrane, biofilm |
| Proteins: | |
| Description: | Primary source: http://terpconnect.umd.edu/~jbklauda/memb.html PMSPE, PMSPG and AEPG residues have been renamed PSPE, PSPG and YOPG, respectively. |
| References: |
Yu2018
The Journal of Chemical Physics, 149.
Modeling Pseudomonas aeruginosa inner plasma membrane in planktonic and biofilm modes |