N.B.: If you use the following files in your work, please cite the primary source. (see Description field)
| Name: | yeast t2 |
| Lipids: | PYPI, DYPC, ERGO, POPI, YOPC, DYPE, YOPE, YOPS, YOPA |
| Forcefield: | charmm36 |
| Software: | Namd 2 |
| Files: |
LIM8_yeast_t2.pdb,
LIM8_yeast_t2.txt Parameters and other files
supplementary/
Simulation files
supplementary/t2-200ns.pdb supplementary/t2.xplor.psf supplementary/README supplementary/t2.psf |
| Number: | 300 lipids |
| Temperature: | 303 °K |
| Equilibration: | 200 ns |
| Tags: | saccharomyces cerevisiae, yeast, trans golgi network |
| Proteins: | |
| Description: | Primary source: http://terpconnect.umd.edu/~jbklauda/memb.html ERG residues have been renamed ERGO. |
| References: |
Monje-Galvan2015
Biochemistry, 54.
Modeling Yeast Organelle Membranes and How Lipid Diversity Influences Bilayer Properties |