N.B.: If you use the following files in your work, please cite the primary source. (see Description field)
| Name: | soybean hypocotyl plasma membrane |
| Lipids: | DIPC, SITO, PIPE, PIPC, PIPI, STIG, IWPE |
| Forcefield: | charmm36 |
| Software: | Namd 2 |
| Files: |
LIM6_soybean_hypocotyl_plasma_membrane.pdb,
LIM6_soybean_hypocotyl_plasma_membrane.txt Parameters and other files
supplementary/
Simulation files
supplementary/hypo1-150ns.crd supplementary/hypo1.xplor_ext.psf supplementary/hypo1.psf supplementary/README supplementary/hypo1-150ns.pdb |
| Number: | 200 lipids |
| Temperature: | 303 °K |
| Equilibration: | 150 ns |
| Tags: | plasma membrane, plant, soybean, hypocotyl |
| Proteins: | |
| Description: | Primary source: http://terpconnect.umd.edu/~jbklauda/memb.html DLIPC, DLIPE, DLIPI, LLPA, LLPC, LLPE, LLPS, PLPA, PLPC, PLPE and PLPI residues have been renamed DIPC, DIPE, DIPI, IWPA, IWPC, IWPE, IWPS, PIPA, PIPC, PIPE and PIPI, respectively. |
| References: |
Zhuang2017
The Journal of Chemical Physics, 146.
Simulations of simple linoleic acid-containing lipid membranes and models for the soybean plasma membranes |