N.B.: If you use the following files in your work, please cite the primary source. (see Description field)
| Name: | mammalian plasma membrane |
| Lipids: | CHOL, PIPC, POPE, POPC, PAPE, PAPS, PIPE, DAPE, DPSM, POPS, DOPE, PUPE, PUPS, PNSM, POPI, PAPC, XNSM, PIPI, PAPI, DXSM, PQPE, DUPE, BNSM, PIPS, DBSM, PUPI, DOPC, POI1, POI6, POI7, POPA, PQPS, PIPA, PAPA, PEPC, PUPC, DAPS, DUPS, POSM, PGSM, PADG, PUPA, DAPC, PNCE, PODG, DPCE, PIDG, XNCE, PUDG, DXCE, DPG1, DPG3, PNG1, PNG3, P0PC, DXG1, XNG1, DXG3, XNG3, O0PC, I0PC, A0PC, U0PC |
| Forcefield: | martini 2.0 |
| Software: | Gromacs 4.5 |
| Files: |
LIM24_mammalian_plasma_membrane.gro,
LIM24_mammalian_plasma_membrane.txt Parameters and other files
md-production.mdp
Simulation files
|
| Number: | 19239 lipids |
| Temperature: | 310 °K |
| Equilibration: | 40000 ns |
| Tags: | mammalian, plasma membrane |
| Proteins: | |
| Description: | Primary source: http://www.cgmartini.nl/index.php/plasma-membrane Simulations have been performed using the GROMACS simulation package version 4.5.x and 4.6.x. POPC and PIPC (version Ingolfsson2014) have position restrains on the z-axes on the PO4 bead that can be controled with POS_Z_AXES POPX, PIPX, POP1, POP2, POP3, PPC, OPC, IPC, APC and UPC have been renamed POPC, PIPC, POI1, POI6, POI7, P0PC, O0PC, I0PC, A0PC and U0PC. |
| References: |
Ingólfsson2014
Journal of the American Chemical Society, 136.
Lipid Organization of the Plasma Membrane |