Membranes


N.B.: If you use the following files in your work, please cite the primary source. (see Description field)

Name:Stratum Corneum T16
Lipids: SPCE, CHOL, LIGN
Forcefield: charmm36
Software:Namd 2
Files: LIM21_Stratum_Corneum_T16.pdb, LIM21_Stratum_Corneum_T16.txt
Parameters and other files
supplementary/
supplementary/t16.pdb
supplementary/t16.psf
supplementary/t16.crd
supplementary/README
Simulation files
Number:200 lipids
Temperature:305 °K
Equilibration:350 ns
Tags:stratum corneum
Proteins:
Description:

Primary source: http://terpconnect.umd.edu/~jbklauda/memb.html

CER160 and CHL1 lipids have been renamed SPCE and CHOL
Simulations have been done with NAMD

References: Wang2018a The Journal of Physical Chemistry B, 122. Simulations of Pure Ceramide and Ternary Lipid Mixtures as Simple Interior Stratum Corneum Models
Composition:
Upper leaflet 1
34 SPCE (Venable2014) ( 34.0%)
33 CHOL (Lim2012) ( 33.0%)
33 LIGN (Wu2014_-1) ( 33.0%)
Lower leaflet 1
34 SPCE (Venable2014) ( 34.0%)
33 CHOL (Lim2012) ( 33.0%)
33 LIGN (Wu2014_-1) ( 33.0%)
Curator: Jean-Marc Crowet on Dec. 7, 2020

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