Membranes


N.B.: If you use the following files in your work, please cite the primary source. (see Description field)

Name:bovine ocular lens
Lipids: CHOL, SNSM, DOPE, DPPC
Forcefield: charmm36
Software:Namd 2
Files: LIM18_bovine_ocular_lens.pdb, LIM18_bovine_ocular_lens.txt
Simulation files
Number:100 lipids
Temperature:310 °K
Equilibration:300 ns
Tags:mammalian, ocular lens, bovine
Proteins:
Description:

Primary source: http://terpconnect.umd.edu/~jbklauda/memb.html

CHL1 and NSM lipids have been renamed CHOL and SNSM

References: Adams2018 Biochimica et Biophysica Acta (BBA) - Biomembranes, 1860. Simulations of simple Bovine and Homo sapiens outer cortex ocular lens membrane models with a majority concentration of cholesterol
Composition:
Upper leaflet 1
32 CHOL (Lim2012) ( 64.0%)
6 SNSM (Venable2014) ( 12.0%)
6 DOPE (Klauda2010) ( 12.0%)
6 DPPC (Klauda2010) ( 12.0%)
Lower leaflet 1
32 CHOL (Lim2012) ( 64.0%)
6 SNSM (Venable2014) ( 12.0%)
6 DOPE (Klauda2010) ( 12.0%)
6 DPPC (Klauda2010) ( 12.0%)
Curator: Jean-Marc Crowet on Dec. 8, 2020

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