N.B.: If you use the following files in your work, please cite the primary source. (see Description field)
| Name: | yeast avg |
| Lipids: | DOPC, CHOL, POPE, DPPC, POPA, POPS |
| Forcefield: | charmm36 |
| Software: | Namd 2 |
| Files: |
LIM13_yeast_avg.pdb,
LIM13_yeast_avg.txt Parameters and other files
supplementary/
Simulation files
supplementary/avg-yeast.psf supplementary/avg-yeast.xplor.psf supplementary/README supplementary/avg-yeast-200ns.pdb |
| Number: | 270 lipids |
| Temperature: | 303 °K |
| Equilibration: | 200 ns |
| Tags: | saccharomyces cerevisiae, yeast |
| Proteins: | |
| Description: | Primary source: http://terpconnect.umd.edu/~jbklauda/memb.html CHL1 and ERG residues have been renamed CHOL and ERGO, respectively. |
| References: |
Monje-Galvan2015
Biochemistry, 54.
Modeling Yeast Organelle Membranes and How Lipid Diversity Influences Bilayer Properties |