N.B.: If you use the following files in your work, please cite the primary source. (see Description field)
| Name: | plant thylakoid |
| Lipids: | DWMG, DWGG, WPSG, 3WPG, 3PPG, WPGG, WPMG |
| Forcefield: | gromos53a6 deVries2012 |
| Software: | Gromacs 4.5 |
| Files: |
LIM10_plant_thylakoid.gro,
LIM10_plant_thylakoid.txt Parameters and other files
md.mdp
Simulation files
|
| Number: | 160 lipids |
| Temperature: | 300 °K |
| Equilibration: | 1200 ns |
| Tags: | plant, thylakoid, spinacia oleracea, spinach |
| Proteins: | |
| Description: | Primary source: http://cgmartini.nl/index.php/example-applications2/lipid-membranes PPG, PPT, PDGDG, PDGDT, PMGDG, PMGDT and PSQDG residues have been renamed 3PPG, 3WPG, WPGG, DWGG, WPMG, DWMG and WPSG. Salt concentration: 88mM |
| References: |
vanEerden2015
Biochimica et Biophysica Acta (BBA) - Biomembranes, 1848.
Characterization of thylakoid lipid membranes from cyanobacteria and higher plants by molecular dynamics simulations |