! protein topology and parameter
open read card unit 10 name toppar/top_all36_prot.rtf
read  rtf card unit 10

open read card unit 20 name toppar/par_all36m_prot.prm
read para card unit 20 flex

! nucleic acids
open read card unit 10 name toppar/top_all36_na.rtf
read  rtf card unit 10 append

open read card unit 20 name toppar/par_all36_na.prm
read para card unit 20 append flex

! carbohydrates
open read card unit 10 name toppar/top_all36_carb.rtf
read  rtf card unit 10 append

open read card unit 20 name toppar/par_all36_carb.prm
read para card unit 20 append flex

! lipids
open read card unit 10 name toppar/top_all36_lipid_header.rtf
read  rtf card unit 10 append

open read card unit 20 name toppar/par_all36_lipid.prm
read para card unit 20 append flex

! CGENFF
open read card unit 10 name toppar/top_all36_cgenff.rtf
read  rtf card unit 10 append

open read card unit 20 name toppar/par_all36_cgenff.prm
read para card unit 20 append flex


stream toppar/toppar_water_ions.str        
stream toppar/toppar_dum_noble_gases.str
stream toppar/toppar_ions_won.str

stream toppar/toppar_all36_prot_arg0.str               
stream toppar/toppar_all36_prot_c36m_d_aminoacids.str  
stream toppar/toppar_all36_prot_fluoro_alkanes.str     
stream toppar/toppar_all36_prot_heme.str
stream toppar/toppar_all36_prot_na_combined.str
stream toppar/toppar_all36_prot_retinol.str
stream toppar/toppar_all36_prot_modify_res.str

stream toppar/toppar_all36_lipid_bacterial_para.str  
stream toppar/toppar_all36_lipid_cholesterol_para.str  
stream toppar/toppar_all36_lipid_lps_para.str          
stream toppar/toppar_all36_lipid_miscellaneous_para.str  
stream toppar/toppar_all36_lipid_prot_para.str           
stream toppar/toppar_all36_lipid_sphingo_header.str      
stream toppar/toppar_all36_lipid_sphingo_para.str        
stream toppar/toppar_all36_lipid_yeast_para.str        
stream toppar/toppar_all36_lipid_detergent_para.str    
stream toppar/toppar_all36_lipid_ether_para.str        

stream toppar/toppar_all36_carb_glycolipid_para.str  
stream toppar/toppar_all36_carb_glycopeptide.str     
stream toppar/toppar_all36_carb_imlab_para.str       

stream toppar/toppar_all36_na_nad_ppi.str              
stream toppar/toppar_all36_na_rna_modified.str         



